PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g18120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 87aa    MW: 9824.16 Da    PI: 10.0515
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g18120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.9e-091446132
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                     rg+W++eEd  l+ +v+ +G+g +W + +++ g
   Vang01g18120.1 14 RGPWSPEEDATLKAYVESHGTGgNWIALPKKAG 46
                     89***********************99888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-18586IPR009057Homeodomain-like
SuperFamilySSF466891.01E-9885IPR009057Homeodomain-like
PROSITE profilePS5129411.711983IPR017930Myb domain
SMARTSM007173.8E-71381IPR001005SANT/Myb domain
PfamPF002491.5E-91477IPR001005SANT/Myb domain
CDDcd001676.56E-61679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKAYVE SHGTGGNWIA LPKKAGFSLF FPNTYSHFSN  60
TFFSFQTDND VKNYWNTKLK KKIMAGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-106AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596010.17e-34PREDICTED: transcription factor RAX2
SwissprotQ9SJL79e-32RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A0S3RPK81e-35A0A0S3RPK8_PHAAN; Uncharacterized protein
STRINGGLYMA14G10483.12e-33(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.15e-33MYB family protein